Skip to content

Install issues #5

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
Li-Wentao opened this issue Oct 20, 2022 · 1 comment
Open

Install issues #5

Li-Wentao opened this issue Oct 20, 2022 · 1 comment

Comments

@Li-Wentao
Copy link

Li-Wentao commented Oct 20, 2022

Hi, I love this repo and would like to have a test run! However, I encounter some installation issues like the followings:
`
[ 16%] Building C object CMakeFiles/htslib.dir/_deps/htslib-src/htscodecs/htscodecs/rANS_static.c.o

[ 16%] Building C object CMakeFiles/htslib.dir/_deps/htslib-src/htscodecs/htscodecs/rle.c.o

[ 16%] Building C object CMakeFiles/htslib.dir/_deps/htslib-src/htscodecs/htscodecs/tokenise_name3.c.o

[ 18%] Linking C static library libhtslib.a

[ 18%] Built target htslib

[ 18%] Building CXX object CMakeFiles/peg2cpp.dir/compiler/util/peg2cpp.cpp.o

In file included from /root/sequre/seq/compiler/util/peg2cpp.cpp:2:

/root/sequre/seq/./compiler/util/peglib.h:12:10: fatal error: 'any' file not found

#include
^
1 error generated.

CMakeFiles/peg2cpp.dir/build.make:75: recipe for target 'CMakeFiles/peg2cpp.dir/compiler/util/peg2cpp.cpp.o' failed

make[2]: *** [CMakeFiles/peg2cpp.dir/compiler/util/peg2cpp.cpp.o] Error 1

CMakeFiles/Makefile2:469: recipe for target 'CMakeFiles/peg2cpp.dir/all' failed

make[1]: *** [CMakeFiles/peg2cpp.dir/all] Error 2

Makefile:145: recipe for target 'all' failed

make: *** [all] Error 2`

Here are my system specs:
`
NAME="Ubuntu"

VERSION="16.04.7 LTS (Xenial Xerus)"

ID=ubuntu

ID_LIKE=debian

PRETTY_NAME="Ubuntu 16.04.7 LTS"

VERSION_ID="16.04"

HOME_URL="http://www.ubuntu.com/"

SUPPORT_URL="http://help.ubuntu.com/"

BUG_REPORT_URL="http://bugs.launchpad.net/ubuntu/"

VERSION_CODENAME=xenial

UBUNTU_CODENAME=xenial`

Much appreciate it if you can help.

@hsmajlovic
Copy link
Member

hsmajlovic commented Oct 20, 2022

Hi @Li-Wentao.

Make sure you are using the C++17 compiler. Also, try using the latest install script.
FYI, we are waiting for the next Seq release to fix some build issues.

Additionally, you can try running Sequre via docker.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants